Effects of the Mediterranean Diet on Gut Microbiota Composition and Diversity in Overweight and Obesity: A Scoping Review of Randomized Controlled Trials

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Alanna Michel Zorrilla Marte
Angela Quinche
Gabrielle Sigaki
Giulia Soares
Josefina Maria Bran
Nathalia Serrato
Aarti Garg
Anushka Verma
Arthur de Ávila
Arthur Braga
Brian Villafuerte-Trisolini
Drumadala Gajbhiye
Elif Kortan
Enkhtuul Iderjavkhlan
Fernanda Mishelly Yánez Llerena
Lucas Caro Herrera
Manuela Neira
Maria Guadalupe Gomez-Castano
Nicole Schleicher
Pedro Jara-Guajardo
Pedro Henrique Faria
Renzo Villagra
Roberto Segura-Retana
Ruzika Puljic
Sherin Rahim
Stefano Doronzio
Sulaiman Abubakar
Waleed El Harith

Abstract

Background: The Mediterranean diet (MedDiet) is widely associated with anti-inflammatory and metabolic benefits, and
gut microbiota modulation has been proposed as a critical mechanistic pathway. However, evidence from randomized
controlled trials (RCTs) remains fragmented, and it is unclear whether MedDiet produces consistent microbiome changes in
overweight and obese populations.



Objective: To systematically map and synthesize evidence from RCTs evaluating the effects of MedDiet interventions on
gut microbiota composition, inflammatory biomarkers, and metabolic outcomes in adults with overweight or obesity.
Methods: A scoping review was conducted following PRISMA-ScR guidelines. PubMed, Embase, and Scopus were
searched through May 2025 for RCTs evaluating MedDiet interventions in adults with BMI ≥ 25 kg/m2 without the use of
microbiota-targeted supplementation. Primary outcomes included gut microbiota composition and diversity. Secondary
outcomes included inflammatory biomarkers (CRP, IL-6, TNF-α) and anthropometric or metabolic measures. Risk of bias
was assessed using the RoB 2 tool.



Results: Eight RCTs met inclusion criteria, of which four evaluated gut microbiota directly. MedDiet interventions were
associated with selective enrichment of metabolically favorable taxa, including short-chain-fatty-acid–producing genera
such as Roseburia, Faecalibacterium, and Akkermansia, supporting biologically plausible pathways linking diet to metabolic
and inflammatory regulation. However, global diversity metrics—including alpha diversity and Firmicutes/Bacteroidetes
ratio—showed inconsistent or non-significant changes across studies. Improvements in inflammatory markers and anthropometric outcomes were more consistently observed than microbiota diversity shifts. Notably, comparator diets—including
low-fat, ketogenic, and low-carbohydrate regimens—also produced microbiome changes, highlighting the difficulty in
isolating MedDiet-specific microbial effects. Substantial heterogeneity in intervention design, duration, microbiome analysis
methods, and outcome prioritization limited cross-trial comparability.



Conclusion: Evidence from randomized trials suggests that the Mediterranean diet may exert metabolically relevant effects
through selective modulation of specific microbial taxa rather than uniform changes in global microbiome diversity. While
inflammatory and metabolic improvements are consistently observed, microbiota-mediated mechanisms remain incompletely
characterized. Future RCTs should incorporate standardized microbiome endpoints, longer follow-up, and mechanistic
analyses to clarify causal pathways and distinguish MedDiet-specific effects from broader dietary influences.

Article Details

How to Cite
Effects of the Mediterranean Diet on Gut Microbiota Composition and Diversity in Overweight and Obesity: A Scoping Review of Randomized Controlled Trials. (2026). Principles and Practice of Clinical Research, 11(4). https://doi.org/10.21801/ppcrj.2025.114.6
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Author Biography

Ruzika Puljic, Principles and Practice in Clinical Research Program, Harvard T.H. Chan School of Public Health, Boston, MA, USA; Abbott Diabetes Care GmbH, Medical Affairs DACH, Baar, Switzerland

PhD

How to Cite

Effects of the Mediterranean Diet on Gut Microbiota Composition and Diversity in Overweight and Obesity: A Scoping Review of Randomized Controlled Trials. (2026). Principles and Practice of Clinical Research, 11(4). https://doi.org/10.21801/ppcrj.2025.114.6

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